Curriculum Vitae

Work

2016/05-   Research Associate, Dept. of Biological and Environmental Engineering, Cornell University

2013/04-2016/04    Kavli Postdoctoral Fellow, Kavli Institute at Cornell for Nanoscale Science, Cornell University

2011/04-2013/03    Assistant Professor, Dept. of Bioengineering and Robotics, Tohoku University

Education

2011 Doctor of Engineering, Interdisciplinary Graduate School of Science and Engineering, Tokyo Institute of Technology, Tokyo, Japan
2009 Master of Engineering, Interdisciplinary Graduate School of Science and Engineering, Tokyo Institute of Technology, Tokyo, Japan
2007 Bachelor of Engineering, School of Engineering, Tokyo Institute of Technology, Tokyo, Japan

  • 2009.04-2011.03 Dept. of Computational Intelligence and Systems Science, Tokyo Institute of Technology (Dr. Eng., Early Graduation), Japan
  • 2010.04-2011.03 Special Research Student, Dept. of Bioengineering and Robotics, Tohoku University, Japan
  • 2009.04-2011.03 Research Fellow (DC1), JSPS.
  • 2007.04-2009.03 Dept. of Computational Intelligence and Systems Science, Tokyo Institute of Technology (M. Eng.)
  • 2003.04-2007.03 Dept. of Control and Systems Engineering, Tokyo Institute of Technology (B. Eng.)

Publications/Presentations

Journals

  • Daisuke Kandatsu, Keitel Cervantes-Salguero, Ibuki Kawamata, Shogo Hamada, Shin-Ichiro M Nomura, Kenzo Fujimoto, Satoshi Murata. Reversible Gel‐Sol Transition of Photo‐Responsive DNA Gel. ChemBioChem  17(12) 1118-1121 (2016). DOI: 10.1002/cbic.201600088
  • Junghoon Kim, Junwye Lee, Shogo Hamada, Satoshi Murata and Sung Ha Park. Self-replication of DNA rings. Nature Nanotechnology  10, 528-533 (2015). DOI: 10.1038/nnano.2015.87
  • Keitel Cervantes-Salguero, Shogo Hamada, Shin-ichiro M. Nomura, and Satoshi Murata. Polymorphic Ring-Shaped Molecular Clusters Made of Shape-Variable Building Blocks. Nanomaterials 5(1), 208-217 (2015). DOI: 10.3390/nano5010208
  • Dayong Yang, Mark R. Hartman, Thomas L. Derrien, Shogo Hamada, Duo An, Kenneth G. Yancey, Ru Cheng, Minglin Ma, and Dan Luo. DNA Materials: Bridging Nanotechnology and Biotechnology. Acc. Chem. Res., (2014). DOI: 10.1021/ar5001082
  • Mark Richard Hartman, Roanna Clarissa Ruiz, Shogo Hamada, Chuanying Xu, Kenneth Gene Yancey, Yan Yu, Wei Han and Dan Luo. 
    Point-of-care nucleic acid detection using nanotechnology. Nanoscale 5, 10141-10154 (2013). DOI: 10.1039/C3NR04015A  [Review]
  • Junwye Lee, Shogo Hamada, Si Un Hwang, Rashid Amin, Junyoung Son, Sreekantha Reddy Dugasani, Satoshi Murata & Sung Ha Park. Quantitative analysis of molecular-level DNA crystal growth on a 2D surface. Scientific Reports 3, 2115 (2013). doi:10.1038/srep02115.
  • Hamada, S., Murata, S. Theoretical Model of Substrate-Assisted Self-Assembly of DNA Nanostructures. RSC Advances 2, 7406-7412 (2012). DOI:10.1039/C2RA20764H.
  • Lee, J., Hamada, S., Amin, R., Kim, S., Kulkarni, A., Kim, T., Roh, Y., Murata, S. and Park, S. H. Size-Controllable DNA Rings with Copper-Ion Modification. Small. 8(3), 374–377 (2012). doi: 10.1002/smll.201101561
  • Hamada, S., Murata, S. Algorithmic Self-assembly of Single-duplex DNA Nanostructures. International Journal of Unconventional Computing. 7(1-2), 25-37 (2011). web
  • Hamada, S., Murata, S. Substrate-Assisted Assembly of Interconnected Single-Duplex DNA Nanostructures. Angewandte Chemie International Edition. 48(37), 6820–6823 (2009). DOI: 10.1002/ange.200902662
  • Ayukawa, S., Kobayashi, A., Nakashima, Y., Takagi, H., Hamada, S., Uchiyama, M., Yugi, K., Murata, S., Sakakibara, Y., Hagiya, M., Yamamura, M., Kiga, D. SYANAC: SYnthetic biological Automaton for Noughts And Crosses. IET Synthetic Biology. 1(1-2) 64-67 (2007). DOI: 10.1049/iet-stb:20070003
    • Related Conference Proceedings: Ayukawa, S., Kobayashi, A., Nakashima, Y., Takagi, H., Hamada, S., Uchiyama, M., Yugi, K., Murata, S., Sakakibara, Y., Hagiya, M., Yamamura, M., Kiga, D. Construction of a genetic AND gate under a new standard for assembly of genetic parts. BMC Genomics 11(Suppl 4):S16 (2010). DOI: 10.1186/1471-2164-11-S4-S16

Commentary Articles

  • Hamada, S., Tan, S. J., Luo, D. Nanoparticle crystallization: DNA-bonded 'atoms'. Nature Materials. 13(2) 121-122 (2014). DOI: 10.1038/nmat3876
  • Murata, S., Hamada, S. DNA Tiles. Journal of the Robotics Society of Japan. 28(10), (2010).

Conference (Oral Presentation)

  • Hamada, S. DNA Hydrogel: towards realization of “slime-like” molecular robots. Tokyo Tech Symposium "Towards the Next Stages of Robotics". (Tokyo, Japan) 2015/01/06 [Invited Speaker]
  • Hamada, S. Macroscale DNA Structures toward Molecular Robotics. The 3rd Molecular Robotics Workshop. (Iwanuma, Japan) 2014/03/16 [Invited Speaker]
  • Hamada, S. Substrate-Assisted Self-Assembly of DNA Nanostructures. 1st DNA Nanotechnology Forum. (Daejeon, Korea) 2012/12/17 [Invited Speaker]
  • Hamada, S., Murata, S. A Preliminary Study on Colloidal Crystallization of DNA Motifs. 9th Annual Conference Foundations of Nanoscience (FNANO12). 2012/04/17 [Invited Speaker]
  • Hamada, S., Murata, S. Theoretical Model of Substrate-Assisted Self-Assembly of DNA Motif. 17th International Conference on DNA Computing and Molecular Programming. 2011/09/22
  • Hamada, S., Murata, S. Extending the geometrical design of DNA nanostructures. Fourth International Workshop on Natural Computing (IWNC09).  2009/09/23
    • Proceedings: Hamada, S., Murata, S. Extending the Geometrical Design of DNA Nanostructures. Natural Computing, PICT (Springer)2(3), 157-164 (2010).

Domestic Conference/Symposium (Oral Presentation)

  • 浜田省吾「DNAナノ構造の基板成長メカニズム」分子ロボティクス研究会 2010/09/23
  • 浜田省吾, 村田 智 「自己集合モチーフによる DNA ナノ構造の作製技術 ~DNA タイルとその周辺~」計測自動制御学会 システム・情報部門学術講演会(SSI09) 2009/11/26
  • 浜田省吾「T字型核酸分岐を用いた各種DNAナノ構造の作製」科研費特定領域研究「高次系分子科学」第7回シンポジウム 2009/8/1
  • 浜田省吾「ナノシステムのための新規核酸モチーフ」ナノデバイス研究会2009/3/9
  • 浜田省吾「新規DNAナノ構造体の設計及び作製」MesoMolSys研究会夏季セミナー 2008/09/05
  • 浜田省吾, 村田 智 「核酸を用いた新規構造体モチーフの設計」 計測自動制御学会 第20回自律分散システム・シンポジウム 2008/01/25

Research Group/Special Seminar

  • オーストラリア ロイヤルメルボルン大学セミナー RMIT University Seminar 2013/02/22
  • オーストラリア CSIROセンター Seminars at CSIRO Sites (Brisbane/Melbourne) 2013/02/18, 21
  • デンマーク オーフス大学 Specialized iNANO Lecture 2011/09/16
  • 韓国 成均館大学 S.H.Parkグループ セミナー 2010/09/02
  • 米国 アリゾナ州立大学 H. Yanグループ セミナー 2010/04/23
  • 米国 コロンビア大学 M. Stojanovicグループ セミナー 2009/12/11
  • 米国 パデュー大学 C.Maoグループ セミナー 2009/12/9
  • 韓国 成均館大学 S.H.Parkグループ セミナー 2009/09/11

Poster Presentation

  • Hamada, S., Murata, S. Theory of Substrate-Assisted Self-Assembly of DNA Nanostructures. Foundations of Nanoscience 2011  2011/4/12
  • Hamada, S., Murata, S. Toward Self-Organization of DNA Nanorings Using Non-specific Interactions. Foundations of Nanoscience 2010  2010/4/28
  • 上野雄也, 塚本勝男, 村田智, 浜田省吾「DNAタイル結晶の温度依存性」日本結晶成長学会 第39回結晶成長国内会議 2009/11/12-14
  • Hamada, S., Murata, S. Designing Single-Duplex DNA Nanostructures by Abstraction. The first International Workshop on Bio-Design Automaton (IWBDA2009) 2009/07/27
  • Nishimoto, S., Hamada, S., Hayashinaka, T., Murata, S. DNA motifs for Substrate-Assisted Self-Assembly. DNA15 2009/06/10
  • Hamada, S., Murata, S. Design of Interconnected Single Duplex DNA Nanostructures. Foundations of Nanoscience 2009  2009/04/21
  • 浜田省吾, 村田智 「新規DNA構造の設計および作製」 日本結晶成長学会 第33回結晶成長討論会 2008/09/11
  • Hamada, S., Murata, S. A New Motif for DNA-based Nanostructures. Caltech Self-Replicating Chemical Systems Workshop 2008/08/27-28
  • Hamada, S., Murata, S. T-Motif: A Novel Non-crossover Motif for DNA Nanostructures. Foundations of Nanoscience 2008  2008/04/22-25
  • 浜田省吾, 村田智 「DNAナノ構造体のための新規モチーフ設計」 細胞を創る研究会 2007/11/26
  • 浜田 省吾,鮎川 翔太郎,小林 晃大, 中島 悠策,高木 英昌,内山 正彦,柚木 克之,山村 雅幸,榊原 康文, 萩谷 昌己,木賀 大介,村田 智 「生物ロボコン「iGEM」の紹介」計測自動制御学会システム・情報部門 第12回創発システム・シンポジウム 2006/08/18-20

Textbook

  • Tanaka, F., Komiya, K., Takinoue M., Hamada, S., Murata S. DNA Nanoengineering (Japanese), Kindai-kagaku sha (2011). 
    ISBN-13: 978-4764904026

Magazine

  • 浜田 省吾 「DNAナノテクノロジー(5): さまざまなDNAナノ構造」 現代化学(東京化学同人)2016年8月号 (No. 545)
    •  Commentary series on DNA Nanotechnology (5):  "Varieties of DNA nanostructures". Chemistry Today (Japanese), No. 545. Tokyo Kagaku-Dojin. Aug. 2016.

Essay

  • Hamada, S. Morphological Computation at the Molecular Scale, Opinions and Outlooks on Morphological Computation [e-book] (2014). 
    ISBN-13: 978-3-033-04515-6

Others

Teaching Experience

Courses

  • Experiments for Mechanics and Aerodynamics I (Biorobotics and systems course) [機械知能・航空実験 I], Undergraduate Course, Tohoku University (2012).
  • Experiments for Mechanics and Aerodynamics II (Biorobotics and systems course) [機械知能・航空実験 II],, Undergraduate Course, Tohoku University (2011-2012).
  • The Basics of Molecular Robotics [分子ロボティクス基礎] (5, 6 and 13). Graduate Student Course, Tohoku University (2011).
  • An Introduction to Molecular Engineering [分子工作入門], Basic Seminar for Undergraduate Students, Tohoku University (2011-2012).
  • BIOMOD
    • Mentor, Tohoku University (Team Sendai). International Biomolecular Design Competition (BIOMOD) 2012. [Grand Prize, Best Presentation, Best Video, Best Audience Choice Award]
    • Mentor, Tohoku University (Team Sendai). International Biomolecular Design Competition (BIOMOD) 2011. [Gold Medal]

Special Lectures

  • BEE/BME 7600 Cornell University (2014-)

Organization/Conference

  • Judge, International Biomolecular Design Competition (BIOMOD) 2013-.
  • Program Committee Member, The 20th International Conference on DNA Computing and Molecular Programming (DNA 20) (2014)
  • Facilitator, Team Japan. International Biomolecular Design Competition (BIOMOD) 2011-2012.
  • Session Organizer (国際生体分子デザインコンペティション〜チームジャパンの取り組み), 
    SICE Symposium on Systems and Information (SSI) 2011
  • Program Committee, ICMC 2011
  • Session Chair, ICMC 2011
  • Session Chair (Poster Blitz Session), FNANO 2011
  • Secretary, Molecular Robotics Research Group, SICE (2010-)

Patents

  • 特願2008-012050「核酸構造体及びその核酸構造体を用いた核酸構造物」(WO/2009/093558)

Press

Awards

  • Best Cooperation and Collaboration (1st Place) & Best Part (3rd Place), iGEM 2006

Acknowledgments

Funding

  • 2012.10- Member, JSPS Grant-in-Aid for Scientific Research on Innovative Areas (Molecular Robotics)
  • 2011.10-2013.03 JSPS Grant-in-Aid for Research Activity Start-up
  • 2009.04-2011.03 JSPS Grant-in-Aid for JSPS Fellows (DC1)

Fellowship

  • 2009.04-2011.03 JSPS Research Fellowships for Young Scientists (DC1)